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Cambridge Infectious Diseases

An Interdisciplinary Research Centre at the University of Cambridge
 

Publications

Key publications: 

Kemp, S. A., Collier, D. A., Datir, R. P., Ferreira, I. A. T. M., Gayed, S., Jahun, A., et al. (2021). SARS-CoV-2 evolution during treatment of chronic infection. Nature, 1–26. http://doi.org/10.1038/s41586-021-03291-y

Lumby, C. K., Zhao, L., Breuer, J., & Illingworth, C. J. (2020). A large effective population size for established within-host influenza virus infection. eLife, 9, 217–17. http://doi.org/10.7554/eLife.56915

Illingworth, C. J., Raghwani, J., Serwadda, D., Sewankambo, N. K., Robb, M. L., Eller, M. A., et al. (2020). A de novo approach to inferring within-host fitness effects during untreated HIV-1 infection. PLoS Pathogens, 16(6), e1008171–26. http://doi.org/10.1371/journal.ppat.1008171

Lumby, C. K., Nené, N. R., & Illingworth, C. J. (2018). A novel framework for inferring parameters of transmission from viral sequence data. PLoS Genetics, 14(10), e1007718. http://doi.org/10.1371/journal.pgen.1007718

Sobel Leonard, A., McClain, M. T., Smith, G. J. D., Wentworth, D. E., Halpin, R. A., Lin, X., et al. (2017). The effective rate of influenza reassortment is limited during human infection. PLoS Pathogens, 13(2), e1006203–26. http://doi.org/10.1371/journal.ppat.1006203

Viral evolution and transmission
 Chris   Illingworth
Not available for consultancy

Affiliations

Classifications: 
Person keywords: 
Virology
Evolution
Pathogen Evolution
Bioinformatics